PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00222.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 373aa    MW: 41467.5 Da    PI: 6.512
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00222.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-10146203562
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                              kr++r + NR +A rs +RK  +i eLe+kv++L++e ++L  +l+  +     l se
  Rsa1.0_00222.1_g00012.1 146 KRAKRIIANRQSAARSKERKARYIMELERKVQTLQTEATTLSAQLSLFQRDTTGLSSE 203
                              9*****************************************9999887776666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.6E-17142206IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-8144199No hitNo description
PROSITE profilePS5021710.68144207IPR004827Basic-leucine zipper domain
PfamPF001702.0E-9146204IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-10146197No hitNo description
CDDcd147032.02E-22147196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEDSSNAKSN NQCPPPQQPL ATNPSPTPFR GPYHRRAHSE VQFRLPEDLD LSEPFGGFEE  60
LGSEDDIFCT YMDIEKLGSG SDSAPRSDNP FSGENVGGGE EGGSSSRTRH RHSLSVDGGS  120
SSLESIEAKK AMAPDKLAEL WVVDPKRAKR IIANRQSAAR SKERKARYIM ELERKVQTLQ  180
TEATTLSAQL SLFQRDTTGL SSENTELKLR LQVMEQQAKL RDALNDQLKK EVERLKFATG  240
EASHTDAYNL GMAHMQYAQH QPQQQSFFQQ QHHHHQQQTD AQNLQQMTHQ FHLFQPNNNN  300
NNNQNPNVTS AATRQNPQLM HQAGSNPSAQ SHSFAEAMHE DPLGRLQGLD ISSCGRGSSF  360
GRSDAVSESS STM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0742691e-174AY074269.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBankAY0967461e-174AY096746.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBankZ860931e-174Z86093.1 A.thaliana mRNA for b-Zip DNA binding protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747861.10.0PREDICTED: transcription factor RF2b-like
SwissprotQ6S4P48e-96RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A078CS390.0A0A078CS39_BRANA; BnaA05g01800D protein
STRINGBra004582.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40422757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-173bZIP family protein